STRINGSTRING
R2601_19487 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_19487" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_19487Uncharacterized protein (342 aa)    
Predicted Functional Partners:
R2601_14345
Oxidoreductase, Gfo/Idh/MocA family protein (699 aa)
   
 
  0.858
R2601_04743
Mannose-6-phosphate isomerase, type II (477 aa)
   
 
  0.840
R2601_14955
Nucleotidyltransferase family protein (226 aa)
   
  0.782
R2601_14335
Glycosyl transferase, group 1 family protein (411 aa)
 
  0.754
R2601_15115
Undecaprenyl-phosphate galactosephosphotransferase (459 aa)
   
   
  0.735
R2601_10112
Uncharacterized protein (287 aa)
   
 
  0.725
R2601_06103
Putative NAD dependent epimerase/dehydratase (318 aa)
   
 
  0.725
R2601_03243
Uncharacterized protein (110 aa)
   
 
  0.725
R2601_16550
Possible polysaccharide deacetylase (471 aa)
   
 
  0.721
R2601_05693
Putative hydantoin racemase (396 aa)
   
 
  0.721
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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