STRINGSTRING
R2601_19689 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_19689" - Virulence-associated protein E in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_19689Virulence-associated protein E (289 aa)    
Predicted Functional Partners:
R2601_19684
Hypothetical Membrane Spanning Protein (505 aa)
 
          0.900
R2601_19694
Uncharacterized protein (72 aa)
              0.859
R2601_06778
Uncharacterized protein (310 aa)
 
          0.754
R2601_06768
Probably methylase/helicase (732 aa)
 
          0.709
R2601_06743
Probably methylase/helicase (793 aa)
 
          0.693
R2601_06603
Uncharacterized protein (723 aa)
 
          0.682
R2601_06323
Putative methylase/helicase (1127 aa)
 
          0.598
R2601_07563
Uncharacterized protein (712 aa)
 
          0.576
R2601_01533
Putative integrase dna protein (162 aa)
 
          0.491
R2601_06618
Histidine kinase (445 aa)
   
          0.486
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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