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R2601_19779 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_19779" - ABC transporter, ATP-binding/permease protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_19779ABC transporter, ATP-binding/permease protein (669 aa)    
Predicted Functional Partners:
R2601_19784
HlyD family secretion protein (431 aa)
 
 
  0.994
R2601_19774
Toxin secretion ABC transporter protein, HlyB family (521 aa)
 
   
    0.979
R2601_20821
Type I secretion membrane fusion protein, HlyD family (460 aa)
 
 
  0.959
R2601_11936
Type I secretion membrane fusion protein, HlyD family (435 aa)
 
 
  0.953
R2601_19789
RTX toxin, putative (1769 aa)
 
          0.913
R2601_20826
VCBS (1569 aa)
 
          0.848
R2601_04663
RTX toxins and related Ca2+-binding protein (175 aa)
 
     
  0.812
R2601_20706
Glycerophosphoryl diester phosphodiesterase (1019 aa)
 
     
  0.777
R2601_04438
VCBS (3409 aa)
 
     
  0.759
R2601_10229
Uncharacterized protein (357 aa)
 
     
  0.739
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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