STRINGSTRING
R2601_19869 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_19869" - Probable transcription regulator protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_19869Probable transcription regulator protein (298 aa)    
Predicted Functional Partners:
R2601_19879
Cupin family protein (153 aa)
              0.704
R2601_09113
Transcriptional regulator (398 aa)
 
        0.668
R2601_19894
Membrane protein (316 aa)
 
   
  0.658
R2601_24370
Regulatory protein, LysR-LysR, substrate-binding (94 aa)
   
          0.648
R2601_19864
4-carboxymuconolactone decarboxylase, putative (253 aa)
 
          0.642
R2601_19854
Uncharacterized protein (131 aa)
 
          0.636
R2601_09108
Uncharacterized protein (362 aa)
 
   
  0.602
R2601_19874
Uncharacterized protein (334 aa)
              0.580
R2601_23233
Transcriptional regulator, LysR family protein (298 aa)
   
          0.551
R2601_19884
Uncharacterized protein (117 aa)
 
          0.464
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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