STRINGSTRING
R2601_19874 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_19874" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_19874Uncharacterized protein (334 aa)    
Predicted Functional Partners:
R2601_19879
Cupin family protein (153 aa)
              0.860
R2601_14345
Oxidoreductase, Gfo/Idh/MocA family protein (699 aa)
       
    0.748
R2601_19869
Probable transcription regulator protein (298 aa)
              0.580
R2601_16525
Sulfurtransferase (285 aa)
   
   
    0.561
pgi
Phosphohexose isomerase (527 aa)
       
    0.496
R2601_19859
Putative transmemembrane reductase oxidoreductase protein (211 aa)
 
          0.496
R2601_22362
Phosphoadenylyl-sulfate reductase (thioredoxin) ; Reduction of activated sulfate into sulfite (263 aa)
   
   
    0.481
R2601_16765
Pyruvate kinase (478 aa)
       
    0.471
R2601_19889
Short-chain alcohol dehydrogenase (248 aa)
       
    0.469
R2601_12273
Probable Rhodanese-related sulfurtransferase (313 aa)
   
   
    0.449
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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