STRINGSTRING
R2601_19909 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_19909" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_19909Uncharacterized protein (228 aa)    
Predicted Functional Partners:
R2601_19904
Phosphoglycerate dehydrogenase (335 aa)
 
        0.900
R2601_19914
Uncharacterized protein (318 aa)
 
          0.823
R2601_21612
Acetolactate synthase (575 aa)
       
    0.789
R2601_10027
Fructose-1,6-bisphosphatase (321 aa)
         
  0.781
R2601_09395
Acetolactate synthase II large subunit (553 aa)
       
    0.736
R2601_19944
Uncharacterized protein (316 aa)
 
          0.689
R2601_26996
ATP-dependent RNA helicase RhlE (502 aa)
     
 
  0.645
R2601_21071
ATP-dependent RNA helicase, DEAD/DEAH box family protein (727 aa)
     
 
  0.645
R2601_18163
Putative ATP-dependent RNA helicase protein (430 aa)
     
 
  0.645
R2601_08928
Helicase, putative (989 aa)
     
 
  0.645
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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