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R2601_19979 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_19979" - Bordetella uptake gene family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_19979Bordetella uptake gene family protein (327 aa)    
Predicted Functional Partners:
R2601_19969
Uncharacterized protein (507 aa)
 
 
  0.986
R2601_06083
Uncharacterized protein (505 aa)
 
 
  0.969
R2601_00140
TctA protein (505 aa)
 
 
  0.969
R2601_02483
TRAP-T family transporter, large (12 TMs) inner membrane subunit (494 aa)
 
 
  0.969
R2601_19924
TRAP-T family transporter, fused small and large inner membrane subunits (501 aa)
 
 
  0.968
R2601_05998
Uncharacterized protein (496 aa)
 
 
  0.968
R2601_19974
Uncharacterized protein (165 aa)
 
          0.937
R2601_19989
Sensor histidine kinase (456 aa)
 
     
  0.911
R2601_19984
DNA-binding response regulator (222 aa)
 
          0.826
R2601_19994
Uncharacterized protein (333 aa)
 
          0.809
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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