STRINGSTRING
R2601_19989 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_19989" - Sensor histidine kinase in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_19989Sensor histidine kinase (456 aa)    
Predicted Functional Partners:
R2601_19984
DNA-binding response regulator (222 aa)
  0.996
R2601_00155
Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain (222 aa)
  0.983
R2601_19994
Uncharacterized protein (333 aa)
   
    0.968
R2601_08371
Dihydrolipoamide acetyltransferase (461 aa)
   
  0.968
R2601_06623
Response regulator receiver-Transcriptional regulatory protein, C terminal (219 aa)
  0.960
R2601_16540
Transcriptional regulator, winged helix family protein (222 aa)
  0.946
R2601_09405
Chemotaxis response regulator, CheY1 (124 aa)
 
  0.917
R2601_19979
Bordetella uptake gene family protein (327 aa)
 
     
  0.911
R2601_18553
Enoyl-CoA hydratase/isomerase-3-hydroxyacyl-CoA dehydrogenase, 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein (666 aa)
     
  0.907
R2601_17988
Enoyl-CoA hydratase (634 aa)
     
  0.907
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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