STRINGSTRING
R2601_20009 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20009" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20009Uncharacterized protein (278 aa)    
Predicted Functional Partners:
R2601_20004
Citrate lyase, beta subunit, putative (266 aa)
 
 
    0.988
R2601_20019
Putative acyl-CoA dehydrogenase (387 aa)
 
        0.983
R2601_20014
L-carnitine dehydratase/bile acid-inducible protein F (366 aa)
 
 
    0.983
R2601_20099
Citrate lyase beta chain (301 aa)
 
 
    0.861
R2601_03623
Probable acyl-CoA dehydrogenase (395 aa)
 
        0.833
R2601_04038
FadE12_1 (386 aa)
 
        0.831
R2601_06073
Citrate lyase, beta chain (287 aa)
 
 
    0.808
R2601_12540
Beta subunit of citrate lyase (319 aa)
   
 
    0.779
R2601_10794
Citrate lyase, beta subunit (283 aa)
   
 
    0.779
R2601_04048
Citryl-CoA lyase (297 aa)
   
 
    0.779
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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