STRINGSTRING
R2601_20014 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20014" - L-carnitine dehydratase/bile acid-inducible protein F in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20014L-carnitine dehydratase/bile acid-inducible protein F (366 aa)    
Predicted Functional Partners:
R2601_20009
Uncharacterized protein (278 aa)
 
 
    0.983
R2601_20019
Putative acyl-CoA dehydrogenase (387 aa)
 
 
  0.979
R2601_20004
Citrate lyase, beta subunit, putative (266 aa)
 
 
  0.963
R2601_15487
Uncharacterized protein (265 aa)
 
 
    0.848
R2601_19564
Methylmalonyl-CoA mutase (709 aa)
       
  0.838
R2601_10679
Methylmalonyl-CoA mutase (665 aa)
       
  0.838
R2601_23595
Glutaryl-CoA dehydrogenase (406 aa)
 
 
  0.835
R2601_04038
FadE12_1 (386 aa)
 
 
  0.834
R2601_03623
Probable acyl-CoA dehydrogenase (395 aa)
 
 
  0.832
R2601_20034
Acyl-CoA dehydrogenase (384 aa)
   
 
  0.797
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (10%) [HD]