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R2601_20109 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20109" - MmgE/PrpD family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20109MmgE/PrpD family protein (445 aa)    
Predicted Functional Partners:
R2601_25256
Citrate synthase (432 aa)
   
  0.936
R2601_19959
Citrate synthase (259 aa)
 
  0.882
R2601_20104
2-nitropropane dioxygenase, NPD (321 aa)
   
        0.838
R2601_20099
Citrate lyase beta chain (301 aa)
 
        0.805
R2601_09178
Isocitrate lyase family protein (288 aa)
   
 
  0.778
R2601_15487
Uncharacterized protein (265 aa)
 
        0.730
R2601_20094
Probable 3-oxoadipate coa-transferase subunit b protein (211 aa)
              0.673
R2601_20089
3-oxoadipate CoA-transferase, alpha subunit (221 aa)
              0.655
R2601_03513
Uncharacterized protein (189 aa)
   
          0.651
R2601_20084
Uncharacterized protein (657 aa)
              0.638
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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