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R2601_20159 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20159" - S1 RNA binding domain protein in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20159S1 RNA binding domain protein (771 aa)    
Predicted Functional Partners:
nusG
Transcription termination/antitermination protein NusG ; Participates in transcription elongation, termination and antitermination (177 aa)
     
 
  0.792
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1418 aa)
     
 
  0.709
R2601_11896
TPR domain protein (574 aa)
   
  0.597
valS
Valyl-tRNA synthetase ; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner (1025 aa)
   
   
  0.587
rnd
Ribonuclease D ; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides (385 aa)
     
      0.574
R2601_15497
Exonuclease, putative (204 aa)
     
      0.574
R2601_11004
Polyribonucleotide nucleotidyltransferase (463 aa)
     
 
  0.572
R2601_11009
Polyribonucleotide nucleotidyltransferase (250 aa)
     
      0.562
R2601_20154
Uncharacterized protein (626 aa)
              0.522
R2601_27176
UPF0173 metal-dependent hydrolase R2601_27176 (230 aa)
     
      0.520
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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