STRINGSTRING
R2601_20164 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20164" - Drug resistance transporter EmrB/QacA subfamily protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20164Drug resistance transporter EmrB/QacA subfamily protein (505 aa)    
Predicted Functional Partners:
R2601_20169
Transcriptional regulator (182 aa)
 
          0.753
R2601_21447
Nodulation protein (453 aa)
     
  0.630
R2601_21251
Nodulation protein T (377 aa)
     
  0.630
R2601_17619
Type I secretion outer membrane protein, TolC family (468 aa)
       
  0.600
R2601_21902
Transcriptional regulatory protein (150 aa)
 
     
  0.540
R2601_01165
MFS permease (Drug) (428 aa)
 
   
  0.538
R2601_13419
Transcriptional regulatory protein (139 aa)
         
  0.472
R2601_13159
Putative transcription regulator protein (158 aa)
         
  0.472
R2601_13154
Transcriptional regulatory protein (166 aa)
         
  0.472
R2601_12650
Transcriptional regulator (143 aa)
         
  0.472
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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