STRINGSTRING
R2601_20169 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20169" - Transcriptional regulator in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20169Transcriptional regulator (182 aa)    
Predicted Functional Partners:
R2601_20164
Drug resistance transporter EmrB/QacA subfamily protein (505 aa)
 
          0.753
R2601_01883
Uncharacterized protein (642 aa)
   
          0.680
R2601_01888
Hydrolase, alpha/beta hydrolase fold family protein (662 aa)
   
          0.654
R2601_07831
Uncharacterized protein (589 aa)
   
          0.600
R2601_16745
Putative porin (351 aa)
   
          0.588
R2601_27111
Uncharacterized protein (141 aa)
   
          0.585
R2601_09827
Uncharacterized protein (219 aa)
   
          0.572
R2601_27101
Uncharacterized protein (437 aa)
   
          0.570
R2601_07846
Uncharacterized protein (533 aa)
   
          0.565
R2601_16987
Uncharacterized protein (287 aa)
   
          0.547
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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