STRINGSTRING
R2601_20209 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20209" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20209Uncharacterized protein (157 aa)    
Predicted Functional Partners:
R2601_20199
Uncharacterized protein (506 aa)
 
          0.912
R2601_20204
ParA family ATPase (247 aa)
              0.870
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1418 aa)
       
    0.607
moaC
Molybdenum cofactor biosynthesis protein C ; Together with MoaA, is involved in the conversion of 5’- GTP to cyclic pyranopterin monophosphate (cPMP or molybdopterin precursor Z) (158 aa)
       
    0.607
rpoB
Transcriptase subunit beta ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1378 aa)
       
    0.606
R2601_16765
Pyruvate kinase (478 aa)
       
    0.605
R2601_07776
Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase (194 aa)
       
    0.603
R2601_16635
Proteinase (186 aa)
              0.450
R2601_10979
GTP cyclohydrolase-2 ; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5’-phosphate (DARP), formate and pyrophosphate (364 aa)
       
    0.408
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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