STRINGSTRING
R2601_20254 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20254" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20254Uncharacterized protein (393 aa)    
Predicted Functional Partners:
R2601_20546
Uncharacterized protein (544 aa)
 
          0.863
R2601_20551
Glutathione synthase/Ribosomal protein S6 modification enzyme (Glutaminyl transferase)-like (293 aa)
 
     
  0.834
R2601_13749
Nitroreductase family protein (192 aa)
       
  0.575
R2601_05458
Uncharacterized protein (445 aa)
       
  0.575
R2601_20249
Putative D-alanyl-D-alanine carboxypeptidase (520 aa)
   
        0.573
R2601_24869
Alpha,alpha-trehalose-phosphate synthase (258 aa)
   
      0.544
R2601_16870
Nucleotide-binding protein R2601_16870 ; Displays ATPase and GTPase activities (308 aa)
   
   
  0.480
R2601_05518
Major facilitator family protein (397 aa)
   
          0.469
rimK
Probable alpha-L-glutamate ligase (461 aa)
         
  0.465
moaA
Molybdenum cofactor biosynthesis protein A ; Catalyzes, together with MoaC, the conversion of 5’-GTP to cyclic pyranopterin monophosphate (cPMP or molybdopterin precursor Z) (334 aa)
   
        0.461
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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