STRINGSTRING
R2601_20386 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20386" - TRAP-type C4-dicarboxylate transport system, periplasmic component in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20386TRAP-type C4-dicarboxylate transport system, periplasmic component (348 aa)    
Predicted Functional Partners:
R2601_20376
Uncharacterized protein (463 aa)
 
 
  0.997
R2601_20346
Probable transporter (427 aa)
   
 
  0.976
R2601_23625
TRAP-type C4-dicarboxylate transport system, large permease component (426 aa)
 
 
  0.967
R2601_02198
TRAP transporter, DctM subunit (432 aa)
 
 
  0.960
R2601_20341
C4-dicarboxylate transport system permease small protein (164 aa)
         
    0.921
R2601_13174
TRAP-T family transporter, DctM (12 TMs) subunit (426 aa)
 
 
  0.912
R2601_20351
TRAP-type C4-dicarboxylate transport system (342 aa)
   
   
 
0.908
R2601_17429
TRAP dicarboxylate family transporter, DctM subunit (437 aa)
 
 
  0.865
R2601_03803
TrapT family, dctM subunit, C4-dicarboxylate transport (396 aa)
 
 
  0.856
R2601_05348
TRAP transporter, DctM subunit (430 aa)
 
 
  0.856
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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