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R2601_20446 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20446" - Transcriptional regulator, GntR family protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20446Transcriptional regulator, GntR family protein (241 aa)    
Predicted Functional Partners:
R2601_20451
Asparaginase/glutaminase (338 aa)
              0.863
R2601_20456
AP endonuclease, family 2 (276 aa)
              0.859
R2601_09153
Transcriptional regulator, GntR family protein (268 aa)
   
          0.775
R2601_02358
Transcriptional regulator, GntR family protein (260 aa)
   
          0.773
R2601_04278
Transcriptional regulator, GntR family protein (247 aa)
   
          0.713
R2601_20491
Sugar isomerase (SIS) (337 aa)
 
          0.658
R2601_24634
Putative transcription regulator protein (356 aa)
   
          0.546
R2601_20461
AABC amino acid transporter, ATPase subunit (250 aa)
              0.531
R2601_00165
Transcriptional regulator, LacI family protein (338 aa)
   
          0.512
R2601_20496
Putative sugar kinase protein (264 aa)
 
          0.498
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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