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R2601_20466 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20466" - ABC amino acid transporter, periplasmic ligand binding protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20466ABC amino acid transporter, periplasmic ligand binding protein (276 aa)    
Predicted Functional Partners:
R2601_20471
ABC amino acid transporter, inner membrane subunit (220 aa)
  0.979
R2601_20476
ABC amino acid transporter, inner membrane subunit (243 aa)
 
  0.978
R2601_20461
AABC amino acid transporter, ATPase subunit (250 aa)
 
  0.975
R2601_05788
ABC transporter permease protein (223 aa)
  0.940
R2601_05793
Amino acid ABC transporter, ATP-binding protein (245 aa)
 
  0.935
R2601_09552
Glutamate/glutamine/aspartate/asparagine ABC transporter, ATP-binding protein (249 aa)
 
  0.932
R2601_01808
Putative transport system permease abc transporter protein (239 aa)
  0.901
R2601_21917
Branched-chain amino acid ABC transporter, permease protein (618 aa)
       
  0.897
R2601_09547
ABC glutamate/glutamine/aspartate/asparagine transporter, inner membrane subunit BztC (438 aa)
  0.875
R2601_01813
Putative transport system permease abc transporter protein (276 aa)
 
  0.860
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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