STRINGSTRING
R2601_20476 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20476" - ABC amino acid transporter, inner membrane subunit in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20476ABC amino acid transporter, inner membrane subunit (243 aa)    
Predicted Functional Partners:
R2601_20471
ABC amino acid transporter, inner membrane subunit (220 aa)
   
 
0.996
R2601_20461
AABC amino acid transporter, ATPase subunit (250 aa)
  0.986
R2601_20466
ABC amino acid transporter, periplasmic ligand binding protein (276 aa)
 
  0.978
R2601_09552
Glutamate/glutamine/aspartate/asparagine ABC transporter, ATP-binding protein (249 aa)
  0.977
R2601_05793
Amino acid ABC transporter, ATP-binding protein (245 aa)
  0.977
R2601_05783
Uncharacterized protein (269 aa)
  0.955
R2601_01803
Putative periplasmic binding abc transporter protein (258 aa)
  0.944
R2601_20486
Arginosuccinase (499 aa)
 
   
  0.904
R2601_21917
Branched-chain amino acid ABC transporter, permease protein (618 aa)
         
  0.902
R2601_09537
Glutamate/glutamine/aspartate/asparagine ABC transporter, periplasmic substrate-binding protein (339 aa)
 
  0.872
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (9%) [HD]