STRINGSTRING
R2601_20581 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20581" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20581Uncharacterized protein (410 aa)    
Predicted Functional Partners:
R2601_20586
Putative ribulose bisphosphate carboxylaseoxygenase,large subunit (421 aa)
 
          0.981
R2601_20591
Uncharacterized protein (179 aa)
 
          0.965
R2601_20601
Uncharacterized protein (181 aa)
 
          0.933
R2601_01115
Ribulose bisphosphate carboxylaseoxygenase, large subunit protein (421 aa)
 
          0.866
R2601_20606
Putative periplasmic substrate-binding protein (337 aa)
 
          0.865
R2601_20596
Uncharacterized protein (425 aa)
              0.848
R2601_20611
Uncharacterized protein (343 aa)
 
          0.836
R2601_22676
Hydroxypyruvate isomerase ; Catalyzes the reversible isomerization between hydroxypyruvate and 2-hydroxy-3-oxopropanoate (also termed tartronate semialdehyde) (261 aa)
 
   
  0.733
R2601_01160
Uncharacterized protein (275 aa)
 
          0.668
R2601_02468
4-(phosphohydroxy)-L-threonine dehydrogenase ; Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) (329 aa)
 
        0.662
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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