STRINGSTRING
R2601_20711 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20711" - Hemolysin-type calcium-binding region in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20711Hemolysin-type calcium-binding region (786 aa)    
Predicted Functional Partners:
R2601_08331
Uncharacterized protein (63 aa)
   
          0.541
R2601_05473
Glutathione S-transferase (263 aa)
   
          0.471
R2601_05183
Uncharacterized protein (329 aa)
   
          0.430
R2601_23076
Uncharacterized protein (250 aa)
   
          0.424
R2601_12318
Uncharacterized protein (71 aa)
   
          0.410
R2601_18403
Lipoprotein, putative (218 aa)
   
          0.409
R2601_09777
Lipoprotein, putative (226 aa)
   
          0.404
R2601_05193
Probable permease of ABC transporter (523 aa)
   
          0.404
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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