STRINGSTRING
R2601_20781 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20781" - Ribose kinase protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20781Ribose kinase protein (296 aa)    
Predicted Functional Partners:
R2601_20761
Putative nucleoside hydrolase (323 aa)
 
 
  0.988
R2601_20756
Putative nucleoside hydrolase protein (321 aa)
 
 
  0.988
R2601_25311
Inosine-uridine preferring nucleoside hydrolase (312 aa)
 
 
  0.918
rpiA
Phosphoriboisomerase A ; Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate (260 aa)
 
 
  0.904
R2601_16510
Deoxyribose-phosphate aldolase (331 aa)
 
 
  0.897
guaA
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (521 aa)
   
  0.877
prs
Phosphoribosyl pyrophosphate synthase ; Involved in the biosynthesis of ribose 1,5-bisphosphate. Catalyzes the transfer of pyrophosphoryl group from ATP to ribose- 5-phosphate to yield phosphoribosyl diphosphate (PRPP) and AMP (336 aa)
     
  0.866
R2601_20766
ABC transporter permease protein (323 aa)
         
  0.861
R2601_20771
ABC transporter permease protein (312 aa)
         
  0.861
R2601_20776
ABC transporter ATP-binding protein (607 aa)
              0.859
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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