STRINGSTRING
R2601_20786 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20786" - Phage integrase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20786Phage integrase (316 aa)    
Predicted Functional Partners:
R2601_07453
Chromosome partitioning protein, ParB (346 aa)
 
   
  0.530
R2601_26826
Probable site-specific integrase/recombinase (341 aa)
   
          0.515
R2601_19280
Uncharacterized protein (233 aa)
     
   
  0.472
dnaA
Chromosomal replication initiator protein DnaA ; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids (451 aa)
     
   
  0.472
hisS
Histidyl-tRNA synthetase (490 aa)
     
      0.457
rnhB
Ribonuclease HII ; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (215 aa)
         
  0.457
R2601_17819
DNA processing protein DprA, putative (375 aa)
         
  0.452
R2601_09952
Competence protein ComM (504 aa)
              0.451
R2601_09093
Uncharacterized protein (434 aa)
              0.451
R2601_15447
DNA polymerase I (935 aa)
         
  0.445
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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