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R2601_20816 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20816" - ABC transporter, ATP-binding/permease protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20816ABC transporter, ATP-binding/permease protein (690 aa)    
Predicted Functional Partners:
R2601_20821
Type I secretion membrane fusion protein, HlyD family (460 aa)
 
          0.967
R2601_02053
Probable iron ABC transporter, permease protein (345 aa)
 
  0.938
R2601_02343
ABC Fe+3 hydroxamate (Ferrichrome) transporter, fused inner membrane subunits (645 aa)
 
  0.938
R2601_27268
Permease protein of ABC transporter (359 aa)
   
  0.930
R2601_21096
ABC cobalamin/Fe3+-siderophore transporter, inner membrane subunit (325 aa)
   
  0.930
R2601_20811
ABC transporter protein (530 aa)
 
       
0.901
R2601_19784
HlyD family secretion protein (431 aa)
   
          0.778
R2601_19774
Toxin secretion ABC transporter protein, HlyB family (521 aa)
   
          0.775
R2601_21101
ABC cobalamin/Fe3+-siderophore transporter, periplasmic substrate-binding subunit (263 aa)
   
 
  0.769
R2601_02338
ABC transporter, substrate binding protein (Ferrichrome) (278 aa)
   
 
  0.769
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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