STRINGSTRING
R2601_20831 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20831" - Putative hypothetical Gifsy-1 prophage protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20831Putative hypothetical Gifsy-1 prophage protein (376 aa)    
Predicted Functional Partners:
R2601_20841
Uncharacterized protein (117 aa)
              0.859
R2601_20846
Uncharacterized protein (320 aa)
 
          0.770
R2601_01883
Uncharacterized protein (642 aa)
 
          0.602
R2601_20826
VCBS (1569 aa)
              0.566
R2601_01888
Hydrolase, alpha/beta hydrolase fold family protein (662 aa)
 
          0.563
R2601_21487
Transcription antitermination protein (200 aa)
   
          0.476
R2601_02013
Tryptophanyl-tRNA synthetase (333 aa)
   
          0.461
R2601_07118
Uncharacterized protein (193 aa)
   
          0.459
R2601_14990
Acetyltransferase, GNAT family protein (161 aa)
   
          0.427
R2601_17569
Uncharacterized protein (640 aa)
   
          0.425
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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