STRINGSTRING
R2601_20866 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20866" - Probable zinc metalloproteinase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20866Probable zinc metalloproteinase (693 aa)    
Predicted Functional Partners:
R2601_20861
Uncharacterized protein (112 aa)
              0.587
R2601_09922
Peptidyl-dipeptidase, putative (673 aa)
   
          0.451
R2601_23660
Metallopeptidase, family M24 (591 aa)
         
  0.436
R2601_19492
Metallopeptidase, family M24 (380 aa)
         
  0.436
R2601_14255
Creatinase (400 aa)
         
  0.436
R2601_12046
Xaa-Pro aminopeptidase (417 aa)
         
  0.436
R2601_10149
Peptidase, M24 family protein (398 aa)
         
  0.436
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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