STRINGSTRING
R2601_20896 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20896" - Allophanate hydrolase family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20896Allophanate hydrolase family protein (246 aa)    
Predicted Functional Partners:
R2601_20901
Uncharacterized protein (337 aa)
  0.999
R2601_07648
Uncharacterized protein (338 aa)
  0.999
R2601_20906
UPF0271 protein R2601_20906 (258 aa)
 
   
  0.989
R2601_13449
Urea amidohydrolase subunit beta (224 aa)
         
  0.825
R2601_18448
Acetyl-CoA carboxylase (451 aa)
   
    0.803
R2601_07683
UPF0317 protein R2601_07683 (271 aa)
 
   
  0.763
R2601_21727
Methylcrotonyl-CoA carboxylase, alpha subunit (648 aa)
   
 
  0.746
R2601_19539
Propionyl-CoA carboxylase, alpha subunit (666 aa)
   
 
  0.746
gatA
Glutamyl-tRNA(Gln) amidotransferase subunit A ; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln) (495 aa)
   
 
  0.699
R2601_13464
Amidase (504 aa)
   
 
  0.699
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (7%) [HD]