STRINGSTRING
R2601_20921 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20921" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20921Uncharacterized protein (246 aa)    
Predicted Functional Partners:
R2601_20926
Uncharacterized protein (198 aa)
   
 
  0.878
R2601_20931
Glyoxalase family protein (145 aa)
              0.861
R2601_08371
Dihydrolipoamide acetyltransferase (461 aa)
   
 
    0.830
R2601_18985
Bifunctional protein PutA ; Oxidizes proline to glutamate for use as a carbon and nitrogen source (1142 aa)
     
 
    0.814
R2601_19564
Methylmalonyl-CoA mutase (709 aa)
       
    0.812
R2601_10679
Methylmalonyl-CoA mutase (665 aa)
       
    0.812
R2601_22042
Delta-aminolevulinate synthase (407 aa)
   
  0.754
kbl
Glycine acetyltransferase ; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA (395 aa)
   
  0.754
R2601_14650
Transporter, Tim44 family protein (219 aa)
   
          0.726
R2601_09532
Uncharacterized protein (237 aa)
   
        0.697
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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