STRINGSTRING
R2601_20956 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20956" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20956Uncharacterized protein (220 aa)    
Predicted Functional Partners:
R2601_15447
DNA polymerase I (935 aa)
              0.553
R2601_12443
Peptidoglycan-associated lipoprotein (174 aa)
   
     
  0.496
R2601_20961
Uncharacterized protein (73 aa)
              0.490
R2601_24734
Nicotinamide nucleotide repair protein ; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration (536 aa)
     
        0.457
R2601_27106
ABC transporter, ATP-binding protein (227 aa)
              0.451
murC
UDP-N-acetylmuramoyl-L-alanine synthetase ; Cell wall formation (478 aa)
              0.451
R2601_15297
ABC efflux transporter, ATPase subunit (210 aa)
              0.451
R2601_15292
ABC transporter, permease protein (841 aa)
              0.451
R2601_12690
RNA 2’,3’-cyclic phosphodiesterase ; Hydrolyzes RNA 2’,3’-cyclic phosphodiester to an RNA 2’- phosphomonoester (186 aa)
              0.451
R2601_23540
Thiamine-phosphate pyrophosphorylase (202 aa)
              0.450
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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