STRINGSTRING
R2601_20966 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_20966" - Transcriptional regulator, LysR family protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_20966Transcriptional regulator, LysR family protein (290 aa)    
Predicted Functional Partners:
R2601_00570
Transcriptional regulatory protein (308 aa)
   
     
  0.792
R2601_02098
Transcriptional regulator (301 aa)
   
          0.770
R2601_17162
Transcriptional regulator, LysR family protein (296 aa)
   
          0.732
R2601_05763
Transcriptional regulator (305 aa)
   
          0.696
R2601_21316
Transcriptional regulator, LysR family protein (300 aa)
   
          0.692
R2601_20961
Uncharacterized protein (73 aa)
              0.628
R2601_06013
Probable LysR-family transcriptional regulator (303 aa)
   
     
  0.524
R2601_01305
Transcriptional regulator, LysR family protein (303 aa)
   
          0.479
R2601_23233
Transcriptional regulator, LysR family protein (298 aa)
   
        0.464
R2601_01205
Transcriptional regulator (309 aa)
   
        0.450
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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