STRINGSTRING
R2601_21001 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21001" - Guanine deaminase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21001Guanine deaminase (445 aa)    
Predicted Functional Partners:
R2601_02293
Probable oxidoreductase (726 aa)
   
 
  0.987
R2601_08843
Xanthine dehydrogenase family protein, large subunit (763 aa)
   
 
  0.985
R2601_02298
Possible oxidoreductase, molybdopterin-binding subunit (316 aa)
   
 
    0.981
R2601_21952
Xanthine dehydrogenase family protein, medium subunit (282 aa)
 
   
    0.978
deoD
Purine nucleoside phosphorylase DeoD-type (234 aa)
       
  0.973
R2601_10359
Xanthine dehydrogenase, A subunit (460 aa)
 
 
    0.964
R2601_10354
Xanthine dehydrogenase, B subunit (818 aa)
 
 
    0.928
R2601_21957
Xanthine dehydrogenase family protein, small/large subunits (905 aa)
 
 
  0.926
R2601_10349
Xanthine dehydrogenase accessory factor (316 aa)
 
 
    0.926
R2601_11831
Dihydropyrimidine dehydrogenase (434 aa)
   
 
  0.882
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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