STRINGSTRING
R2601_21006 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21006" - Magnesium transporter MgtE in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21006Magnesium transporter MgtE ; Acts as a magnesium transporter (465 aa)    
Predicted Functional Partners:
R2601_21011
5-formyltetrahydrofolate cyclo-ligase (188 aa)
              0.887
R2601_21001
Guanine deaminase (445 aa)
              0.681
R2601_21016
Uncharacterized protein (161 aa)
              0.575
R2601_14750
NADP-dependent malic enzyme (751 aa)
              0.554
R2601_10082
Malic enzyme (759 aa)
              0.554
nadK
ATP-dependent NAD kinase ; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2’-hydroxyl of the adenosine moiety of NAD to yield NADP (253 aa)
 
          0.518
R2601_15517
Ribosomal subunit interface protein, putative (187 aa)
 
          0.516
ksgA
S-adenosylmethionine-6-N’, N’-adenosyl(rRNA) dimethyltransferase ; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (278 aa)
   
        0.479
R2601_23660
Metallopeptidase, family M24 (591 aa)
 
   
  0.473
R2601_15215
Exopolysaccharide biosynthesis domain protein (380 aa)
   
        0.461
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (12%) [HD]