STRINGSTRING
R2601_21016 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21016" - Uncharacterized protein in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21016Uncharacterized protein (161 aa)    
Predicted Functional Partners:
clpS
ATP-dependent Clp protease adapter protein ClpS ; Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation (120 aa)
     
      0.973
ligA
Polydeoxyribonucleotide synthase [NAD(+)] ; DNA ligase that catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA (757 aa)
 
 
 
  0.826
dnaA
Chromosomal replication initiator protein DnaA ; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids (451 aa)
     
      0.742
R2601_14000
ATP-dependent Clp protease, ATP-binding subunit ClpA (776 aa)
   
 
  0.619
clpB
Chaperone protein ClpB ; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE (871 aa)
   
 
  0.619
R2601_12800
Transcriptional regulator, LysR family protein (306 aa)
         
  0.591
R2601_07876
Transcriptional regulator, LysR family protein (314 aa)
         
  0.591
R2601_22062
Probable ClpA/B-type protease (914 aa)
   
 
  0.583
R2601_16070
Probable ClpA/B-type chaperone (889 aa)
   
 
  0.583
R2601_21006
Magnesium transporter MgtE ; Acts as a magnesium transporter (465 aa)
              0.575
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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