STRINGSTRING
R2601_21066 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21066" - ABC transporter, membrane spanning protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21066ABC transporter, membrane spanning protein (Sugar) (433 aa)    
Predicted Functional Partners:
R2601_27141
Dihydropteroate synthase, DHPS-Homocysteine S-methyltransferase-Cobalamin-dependent methionine (1256 aa)
         
  0.813
R2601_23208
Cytochrome-c oxidase chain II/c (319 aa)
   
      0.479
R2601_13049
Cytochrome o ubiquinol oxidase subunit II (377 aa)
   
      0.479
R2601_13069
Cytochrome o ubiquinol oxidase subunit IV (127 aa)
   
        0.462
R2601_21071
ATP-dependent RNA helicase, DEAD/DEAH box family protein (727 aa)
              0.425
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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