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R2601_21071 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21071" - ATP-dependent RNA helicase, DEAD/DEAH box family protein in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21071ATP-dependent RNA helicase, DEAD/DEAH box family protein (727 aa)    
Predicted Functional Partners:
R2601_12081
ATP-dependent DNA helicase RecQ (684 aa)
 
  0.920
eno
2-phosphoglycerate dehydratase ; Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis (424 aa)
 
 
  0.834
R2601_11004
Polyribonucleotide nucleotidyltransferase (463 aa)
   
 
  0.808
R2601_19150
ATP-dependent helicase HrpB (814 aa)
     
  0.781
ftsJ
rRNA (uridine-2’-O-)-methyltransferase ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2’-O position of the ribose in the fully assembled 50S ribosomal subunit (238 aa)
   
 
  0.778
R2601_25526
Cold shock family protein (68 aa)
   
  0.777
R2601_23740
Cold shock family protein (68 aa)
   
  0.777
R2601_11324
Cold shock family protein (68 aa)
   
  0.777
rpmD
50S ribosomal protein L30 (62 aa)
     
  0.775
rplA
50S ribosomal protein L1 ; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release (233 aa)
   
  0.772
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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