STRINGSTRING
R2601_21076 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21076" - Malonate transporter, putative in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21076Malonate transporter, putative (309 aa)    
Predicted Functional Partners:
R2601_21086
Hydrolase, TatD family protein (268 aa)
 
          0.724
R2601_21081
Uncharacterized protein (266 aa)
              0.672
R2601_10659
Helicase, ATP-dependent, putative (511 aa)
   
          0.666
R2601_19599
DNA polymerase III subunit delta (372 aa)
 
          0.592
R2601_14750
NADP-dependent malic enzyme (751 aa)
         
  0.557
R2601_10082
Malic enzyme (759 aa)
         
  0.557
R2601_17749
Uncharacterized protein (174 aa)
   
          0.528
R2601_19614
Lipoprotein, putative (312 aa)
 
          0.507
R2601_13819
Uncharacterized protein (272 aa)
 
          0.489
R2601_10879
Uncharacterized protein (71 aa)
   
          0.478
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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