STRINGSTRING
R2601_21081 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21081" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21081Uncharacterized protein (266 aa)    
Predicted Functional Partners:
R2601_21086
Hydrolase, TatD family protein (268 aa)
 
     
  0.909
R2601_08076
Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1-methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose (292 aa)
   
 
  0.887
lipB
Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase ; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate (216 aa)
 
   
  0.819
R2601_15447
DNA polymerase I (935 aa)
 
          0.673
R2601_21076
Malonate transporter, putative (309 aa)
              0.672
R2601_21091
ABC cobalamin/Fe3+-siderophore transporter, ATPase subunit (249 aa)
 
          0.637
lipA
Sulfur insertion protein LipA ; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives (316 aa)
     
 
    0.583
metG
Methionyl-tRNA synthetase ; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (570 aa)
 
          0.583
R2601_24909
Phosphate regulon sensor histidine kinase, putative (346 aa)
 
     
  0.582
R2601_21101
ABC cobalamin/Fe3+-siderophore transporter, periplasmic substrate-binding subunit (263 aa)
              0.579
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (10%) [HD]