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R2601_21086 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21086" - Hydrolase, TatD family protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21086Hydrolase, TatD family protein (268 aa)    
Predicted Functional Partners:
R2601_21081
Uncharacterized protein (266 aa)
 
     
  0.909
pheT
Phenylalanyl-tRNA synthetase beta subunit (798 aa)
 
 
  0.859
R2601_19599
DNA polymerase III subunit delta (372 aa)
 
   
  0.856
R2601_13865
L-threonylcarbamoyladenylate synthase ; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine (318 aa)
 
   
  0.741
R2601_21076
Malonate transporter, putative (309 aa)
 
          0.724
R2601_10659
Helicase, ATP-dependent, putative (511 aa)
   
 
      0.716
ksgA
S-adenosylmethionine-6-N’, N’-adenosyl(rRNA) dimethyltransferase ; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (278 aa)
 
   
  0.680
R2601_21091
ABC cobalamin/Fe3+-siderophore transporter, ATPase subunit (249 aa)
 
          0.659
tmk
dTMP kinase ; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis (208 aa)
 
   
  0.636
mnmE
tRNA modification GTPase MnmE ; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34 (373 aa)
 
 
  0.631
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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