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mraZ protein (Pelagibaca bermudensis) - STRING interaction network
"mraZ" - Transcriptional regulator MraZ in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mraZTranscriptional regulator MraZ (149 aa)    
Predicted Functional Partners:
R2601_21126
Penicillin-binding protein (596 aa)
 
          0.901
R2601_21121
Putative FtsL (114 aa)
              0.887
rsmH
rRNA (cytosine-N(4)-)-methyltransferase RsmH ; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA (330 aa)
              0.887
murF
D-alanyl-D-alanine-adding enzyme ; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein (477 aa)
              0.758
murE
UDP-N-acetylmuramyl-tripeptide synthetase (494 aa)
              0.758
mraY
UDP-MurNAc-pentapeptide phosphotransferase ; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan (360 aa)
              0.735
bamD
Outer membrane protein assembly factor BamD ; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (275 aa)
   
          0.460
R2601_17629
Uncharacterized protein (109 aa)
   
          0.454
R2601_09797
Uncharacterized protein (237 aa)
   
          0.419
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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