STRINGSTRING
R2601_21221 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21221" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21221Uncharacterized protein (249 aa)    
Predicted Functional Partners:
R2601_21216
Uncharacterized protein (466 aa)
 
          0.973
R2601_18273
Uncharacterized protein (455 aa)
   
          0.726
R2601_09295
Uncharacterized protein (151 aa)
   
          0.720
R2601_26376
Outer membrane protein, OmpA/MotB family (674 aa)
   
          0.716
R2601_09697
Uncharacterized protein (266 aa)
   
          0.659
R2601_16810
Uncharacterized protein (94 aa)
   
          0.648
R2601_21211
Uncharacterized protein (155 aa)
              0.635
R2601_21707
Uncharacterized protein (156 aa)
   
          0.617
R2601_18178
Uncharacterized protein (228 aa)
   
          0.604
R2601_16745
Putative porin (351 aa)
   
          0.583
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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