STRINGSTRING
R2601_21256 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21256" - Possible outer membrane protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21256Possible outer membrane protein (199 aa)    
Predicted Functional Partners:
R2601_23485
Uncharacterized protein (250 aa)
   
          0.647
R2601_18508
Uncharacterized protein (101 aa)
   
          0.638
R2601_26581
Uncharacterized protein (53 aa)
   
          0.602
R2601_09028
Uncharacterized protein (61 aa)
   
          0.590
R2601_00620
Uncharacterized protein (337 aa)
   
          0.587
R2601_09083
Uncharacterized protein (165 aa)
   
          0.579
R2601_25291
Uncharacterized protein (261 aa)
   
          0.575
R2601_23525
Uncharacterized protein (99 aa)
   
          0.567
R2601_16967
Lipoprotein, putative (323 aa)
   
          0.558
R2601_17314
Abortive infection protein (490 aa)
   
          0.549
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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