STRINGSTRING
R2601_21306 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21306" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21306Uncharacterized protein (156 aa)    
Predicted Functional Partners:
R2601_21301
Hydrolase, NUDIX family protein (230 aa)
              0.839
R2601_08993
SURF1 family protein (225 aa)
 
          0.805
R2601_17789
Cytochrome c oxidase, aa3-type, subunit III (266 aa)
 
          0.768
ctaG
Cytochrome c oxidase assembly protein CtaG ; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I (194 aa)
 
          0.753
R2601_09355
UPF0262 protein R2601_09355 (159 aa)
 
     
  0.701
R2601_15070
HemY domain protein (511 aa)
   
          0.680
ctaB
Heme O synthase ; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group (316 aa)
 
          0.641
R2601_14650
Transporter, Tim44 family protein (219 aa)
   
          0.636
R2601_25476
Usg, putative (89 aa)
   
          0.603
R2601_13074
Surf1 protein (239 aa)
 
          0.597
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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