STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAU47391.1Hypothetical protein; COG1405 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB. (156 aa)    
Predicted Functional Partners:
EAU47390.1
Hydrolase, NUDIX family protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
 
     0.785
EAU45456.1
HemY domain protein; COG3071 Uncharacterized enzyme of heme biosynthesis.
  
     0.543
EAU43948.1
Hypothetical protein; COG4598 ABC-type histidine transport system, ATPase component.
  
     0.541
ctaG
Cytochrome C oxidase assembly protein; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
 
     0.540
EAU45672.1
SURF1 family protein.
 
     0.529
EAU43575.1
Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation.
  
     0.527
EAU45662.1
Putative Esterase/lipase/thioesterase; COG2267 Lysophospholipase.
  
     0.505
EAU44192.1
COG5488 Integral membrane protein.
  
     0.502
EAU47010.1
COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3.
 
     0.488
EAU43944.1
Hypothetical protein; Belongs to the UPF0262 family.
 
     0.477
Your Current Organism:
Salipiger bermudensis
NCBI taxonomy Id: 314265
Other names: Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601, S. bermudensis HTCC2601, Salipiger bermudensis HTCC2601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.