STRINGSTRING
R2601_21311 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21311" - Beta-Ig-H3/Fasciclin in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21311Beta-Ig-H3/Fasciclin (159 aa)    
Predicted Functional Partners:
R2601_21316
Transcriptional regulator, LysR family protein (300 aa)
              0.609
R2601_23685
RNA polymerase sigma-70 factor (185 aa)
 
          0.591
R2601_12248
RNA polymerase sigma-70 factor (181 aa)
 
          0.552
R2601_21306
Uncharacterized protein (156 aa)
              0.483
R2601_18393
Sulfur oxidation molybdopterin C protein (425 aa)
              0.451
R2601_21301
Hydrolase, NUDIX family protein (230 aa)
   
        0.432
R2601_23690
Uncharacterized protein (232 aa)
 
          0.413
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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