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R2601_21321 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21321" - Putative calcium-binding EF-hand domain protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21321Putative calcium-binding EF-hand domain protein (222 aa)    
Predicted Functional Partners:
R2601_21336
Uncharacterized protein (165 aa)
 
          0.746
R2601_19584
Endonuclease/exonuclease/phosphatase family protein (333 aa)
   
          0.720
R2601_21326
RNA polymerase sigma-70 factor (194 aa)
              0.659
R2601_21331
Uncharacterized protein (131 aa)
              0.621
R2601_21817
Uncharacterized protein (133 aa)
   
          0.588
R2601_19352
Peptidoglycan binding domain protein (579 aa)
   
          0.555
R2601_21316
Transcriptional regulator, LysR family protein (300 aa)
              0.530
R2601_16745
Putative porin (351 aa)
   
          0.517
R2601_18273
Uncharacterized protein (455 aa)
   
          0.490
R2601_08311
Lipoprotein, putative (177 aa)
   
          0.490
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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