STRINGSTRING
R2601_21346 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21346" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21346Uncharacterized protein (94 aa)    
Predicted Functional Partners:
R2601_21351
HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (232 aa)
              0.887
R2601_16570
Uncharacterized protein (216 aa)
   
          0.730
R2601_17072
Uncharacterized protein (208 aa)
   
          0.711
R2601_10384
ATP phosphoribosyltransferase regulatory subunit (362 aa)
   
          0.709
R2601_10474
Uncharacterized protein (178 aa)
   
          0.705
R2601_08686
Uncharacterized protein (116 aa)
   
          0.678
R2601_21341
Two component diguanylate cyclase (470 aa)
              0.677
R2601_17107
Uncharacterized protein (106 aa)
   
          0.666
R2601_13739
Uncharacterized protein (95 aa)
   
          0.666
R2601_26926
Uncharacterized protein (1097 aa)
   
          0.647
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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