STRINGSTRING
R2601_21411 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21411" - AraC-type DNA-binding domain-containing protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21411AraC-type DNA-binding domain-containing protein (294 aa)    
Predicted Functional Partners:
R2601_18648
Transcriptional regulator, AraC family protein (346 aa)
   
          0.675
R2601_02023
AraC family transcriptional regulator (340 aa)
   
          0.666
R2601_01678
Transcriptional regulator, AraC family protein (317 aa)
   
          0.619
R2601_17993
Putative orphan protein putative membrane protein (281 aa)
   
          0.529
R2601_01698
Putative transcriptional regulator protein (316 aa)
   
          0.529
R2601_21406
Cyclohexanone monooxygenase (543 aa)
 
          0.489
R2601_04843
Uncharacterized protein (222 aa)
   
          0.460
R2601_03083
Transcriptional regulator, AraC family protein (313 aa)
   
          0.457
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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