STRINGSTRING
R2601_21427 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21427" - Helix-turn-helix, AraC type in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21427Helix-turn-helix, AraC type (334 aa)    
Predicted Functional Partners:
R2601_21422
Probable 1,4-butanediol diacrylate esterase (431 aa)
 
          0.943
R2601_18668
Putative sarcosine dehydrogenase protein (853 aa)
       
      0.734
R2601_18198
Chromosome replication initiation inhibitor protein (291 aa)
   
   
  0.543
R2601_17444
Oxidoreductase, FAD-binding protein (413 aa)
   
 
      0.480
R2601_22512
Transcriptional regulator, LysR family protein (301 aa)
     
   
  0.467
R2601_21286
Transcriptional regulator, LysR family protein (320 aa)
     
   
  0.467
R2601_18663
Probable LysR-family transcriptional activator (290 aa)
     
   
  0.467
R2601_17424
RuBisCO operon transcriptional regulator, CbbR (308 aa)
     
   
  0.467
R2601_06368
Transcriptional regulator, LysR family protein (305 aa)
     
   
  0.467
R2601_02603
Transcriptional Regulator, LysR family protein (297 aa)
     
   
  0.467
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (7%) [HD]