STRINGSTRING
R2601_21482 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21482" - Putative negative amidase regulator, AmiC in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21482Putative negative amidase regulator, AmiC (366 aa)    
Predicted Functional Partners:
R2601_21917
Branched-chain amino acid ABC transporter, permease protein (618 aa)
   
 
  0.973
R2601_21487
Transcription antitermination protein (200 aa)
 
          0.973
R2601_13484
Putative permease of ABC transporter (288 aa)
 
 
  0.967
R2601_09470
Branched-chain amino acid ABC transporter, permease protein (569 aa)
 
 
  0.959
R2601_09487
Branched-chain amino acid ABC transporter, ATP-binding protein (231 aa)
 
 
  0.955
R2601_09477
Branched-chain amino acid ABC transporter, permease protein (412 aa)
 
 
  0.954
R2601_09482
Branched-chain amino acid ABC transporter, ATP-binding protein, putative (246 aa)
 
 
  0.947
R2601_13479
ABC-type transport system permease protein II (Probable substrates urea/short chain-amides) (346 aa)
 
 
  0.941
R2601_13474
ABC-type transport system ATP-binding protein II (Probable substrates urea/short chain-amides) (244 aa)
 
   
    0.921
R2601_21492
ABC peptide transporter, inner membrane subunit (296 aa)
 
   
  0.918
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (22%) [HD]