STRINGSTRING
R2601_21522 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_21522" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_21522Uncharacterized protein (457 aa)    
Predicted Functional Partners:
R2601_18668
Putative sarcosine dehydrogenase protein (853 aa)
   
    0.847
R2601_18690
Sarcosine oxidase alpha subunit (996 aa)
   
 
  0.847
R2601_10189
Sarcosine oxidase, alpha subunit family protein (1012 aa)
   
 
  0.847
gcvP
Glycine dehydrogenase (aminomethyl-transferring) ; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein (948 aa)
     
 
    0.816
R2601_22042
Delta-aminolevulinate synthase (407 aa)
   
 
  0.728
kbl
Glycine acetyltransferase ; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA (395 aa)
   
 
  0.728
R2601_26696
Uncharacterized protein (440 aa)
   
 
  0.702
R2601_26101
Uncharacterized protein (456 aa)
   
 
  0.702
R2601_20421
Aminotransferase, class III (445 aa)
   
 
  0.702
R2601_18108
Uncharacterized protein (460 aa)
   
 
  0.702
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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